Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs9370567 | chr6:57038369 | A/C | 3.29E-6 | 404 | 15.33 | 15.43 | 7.8 | KM Plot |
| LGG | rs9370568 | chr6:57041064 | A/C | 3.91E-6 | 400 | 15.13 | 15.43 | 7.8 | KM Plot |
| LGG | rs9382686 | chr6:57027144 | T/C | 3.26E-6 | 405 | 15.25 | 15.43 | 7.8 | KM Plot |
| LGG | rs9383573 | chr6:150204205 | T/C | 0.0002 | 402 | 14.53 | 17.1 | 17.03 | KM Plot |
| LGG | rs9396255 | chr6:56899646 | A/G | 3.78E-6 | 402 | 14.95 | 15.93 | 7.8 | KM Plot |
| LGG | rs9397049 | chr6:150199430 | T/G | 0.000165 | 407 | 14.77 | 17.73 | 17.03 | KM Plot |
| LGG | rs9397053 | chr6:150202033 | A/C | 0.000197 | 404 | 14.53 | 17.1 | 17.03 | KM Plot |
| LGG | rs9397057 | chr6:150204247 | A/G | 0.0002 | 402 | 14.53 | 17.1 | 17.03 | KM Plot |
| LGG | rs9397419 | chr6:150206208 | A/G | 0.00019 | 403 | 14.53 | 17.73 | 17.03 | KM Plot |
| LGG | rs9463267 | chr6:46931654 | T/C | 1.56E-5 | 406 | 15.13 | 16.73 | 12.5 | KM Plot |
| LGG | rs9464419 | chr6:57021010 | C/G | 3.12E-6 | 407 | 15.33 | 15.3 | 7.8 | KM Plot |
| LGG | rs9468256 | chr6:27895504 | G/A | 3.69E-5 | 406 | 15.2 | 15.6 | 14.8 | KM Plot |
| LGG | rs9468267 | chr6:27989921 | G/A | 8.35E-5 | 406 | 15.2 | 15.13 | 17.18 | KM Plot |
| LGG | rs9472920 | chr6:46926129 | A/G | 1.75E-5 | 403 | 15.03 | 16.37 | 12.5 | KM Plot |
| LGG | rs9472921 | chr6:46926134 | T/C | 1.75E-5 | 403 | 15.03 | 16.37 | 12.5 | KM Plot |